Hello David,
I have flown with handhelds in an all original aircraft (Beech RC-45J, AT-11, SNJ and the PV-2) that had no good spot for a fixed install and if set up properly they can be very good and reliable. External antenna is the key to a good working handheld. I have also run a handheld through an original WWII AN104 VHF antenna with excellent results. Do not believe what some people say about the WWII antennas as they are better than a lot of what is being manufactured today.
BT-13's did have AN104's installed with the SCR-522 transceiver as can be seen in many period photos but it would have been a late war thing or as a field mod. If you are going to use an AN-104 make sure it is installed correctly and that the metal cover over the wood is far enough away from the structure. At least 3/8 of an inch. There are also grounding concerns too so call or email me for more info.
I am under the impression that most BT's had the SCR-183/283 as the command radio. The 183/283 transmitted on medium and high frequencies and used a long wire antenna that fed from the radios to the mast and then the tail. There is a feed through insulator for the long wire on the right side of the forward cockpit near where the radios are on the shelf. If you do not want to use the WWII radios

then you can put an extra insulator in the antenna wire about 20 inches up (calculate the quarter wave length for VHF 118-136) from the feed through insulator. This will work as a good VHF antenna but there could be blanking issues being next to the fuselage like that.
If the wire or AN-104 ax handle antenna is not a good option for you then use a wire whip VHF antenna as it is unobtrusive and can be placed in hard to see locations. These are available at all avionics shops.

For more radio options besides the hand held please consider the nice and small Becker or the newer TRIG VHF comm and transponders. These are great and also have remote head options. The new TRIG is a lot cheaper for the remote version when compared to the Becker. Nice and small remote heads for VHF and transponder so you can mount the main unit elsewhere.
Here is the TRIG head which can mount in a standard 2 1/4 inch round instrument hole or something close

The transponder head

You can hide these two or mount them on a removable panel on the right side or wherever. More money for these cool units but you can't beat the quality. Use an ipad or iphone 6+ and Foreflight and a paper chart for your nav and you are good to go VFR.
More options at spruce
http://www.aircraftspruce.com/search/se ... er&x=0&y=0http://www.aircraftspruce.com/search/se ... ig&x=0&y=0As for the intercom I would recommend the PS engineering high noise intercom which works great. You can fix a phone and mic jack in a hidden place or run it through the original jack box.
I am all for keeping it original and authentic and I applaud your efforts to do the same. Keep the old radios and make them work too its a kick and fun to demo too. You can even get an amateur radio license and run them legally. Keep the wiring stock and add a modern harness for the avionics that can be removed later if desired. Try not to drill an extra hole if you can get away with it but make it safe and legal. A little forethought and extra effort really pays off in this area.
Sppeddemon651, please don't take offense at this but the arguments for getting rid of the old radios is hard for me to let go without comment.
I am not saying to try to use them as legal radios for aircraft comms because it is not advisable or legal. You can get them working for fun and it adds another level of authenticity and coolness let alone value. Just having them in even if they don't work is not for everyone but it is a great tribute to those that designed, built, maintained and used them. Radios and those that made them certainly played a big part and still do.
The weight issue is one that irks me. If you carried an additional 80 pounds in your T-6G would you really notice the difference when flying it? Would it have really made a difference in your aircraft performance?
The weight debate has been going on forever. We aren't talking about very much at all in the grand scheme of gross weight. Even with the larger bombers that carry a hundred pounds of radios or more. Would any pilot of a B-25 today really notice any difference if his Mitchell weighed an additional 100 pounds? Now a combat ready B-25 with all of the armor plate and bells and whistles and working turrets will be a heavy bird as do the totally authentic fighters but those are few and far between and can open up a discussion of their own. How about a fuselage fuel tank in a P-51D full of fuel? Now that's a different discussion all together.
The SCR-283 set in the BT-13 might weigh 35 pounds sopping wet. Once again I challenge you to feel a 35 pound difference in an aircraft with a gross weight of 4500 pounds. That's what, under one percent of gross?
Ill get off my save the radios soap box for now